Variant report
Variant | rs16925000 |
---|---|
Chromosome Location | chr8:60511106-60511107 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12541727 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12543325 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12543836 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs12549759 | 0.86[AMR][1000 genomes] |
rs12674637 | 0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs12675414 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs12675873 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs16925057 | 0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs16925086 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs4737548 | 0.82[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs4737549 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs4738780 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs57760637 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs59144101 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs73680605 | 0.87[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs73680606 | 0.87[AMR][1000 genomes] |
rs73680620 | 0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs73680623 | 0.82[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs73680624 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs73680627 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029441 | chr8:60099776-60539141 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
2 | nsv539629 | chr8:60099776-60539141 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv831330 | chr8:60270398-60514078 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1030564 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv539630 | chr8:60445016-60752655 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:60506000-60511800 | Weak transcription | Fetal Heart | heart |