Variant report

Variant	rs72660198
Chromosome Location	chr4:86953247-86953248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1469870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57104166	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60270707	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66738099	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs66850367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67161777	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72660188	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72660194	0.88[EUR][1000 genomes]
rs72660195	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72660197	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72660199	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72660200	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72662006	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72662010	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72662011	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72662012	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7686599	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
3	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
5	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
6	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
7	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:86936800-86953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
11	chr4:86938400-86953400	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:86938600-86953400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:86938600-86953600	Weak transcription	Brain Angular Gyrus	brain
14	chr4:86938600-86954000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
16	chr4:86939200-86953800	Weak transcription	Fetal Stomach	stomach
17	chr4:86944600-86954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:86946400-86954000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr4:86948200-86953800	Weak transcription	Lung	lung
22	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:86948600-86953400	Weak transcription	Left Ventricle	heart
24	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:86949400-86953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:86950600-86959200	Weak transcription	Fetal Brain Male	brain
27	chr4:86950600-86967000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:86952200-86956000	Weak transcription	Spleen	Spleen
29	chr4:86952600-86953600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:86952600-86953600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr4:86952600-86956400	Enhancers	Fetal Heart	heart
32	chr4:86952800-86953400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:86953000-86954000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr4:86953000-86954000	Enhancers	HMEC	breast
35	chr4:86953000-86954000	Enhancers	Osteobl	bone
36	chr4:86953000-86956200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr4:86953200-86953600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:86953200-86953800	Enhancers	Adipose Nuclei	Adipose
39	chr4:86953200-86953800	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr4:86953200-86953800	Enhancers	NHDF-Ad	bronchial
41	chr4:86953200-86954000	Enhancers	Primary hematopoietic stem cells	blood
42	chr4:86953200-86954000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:86953200-86954000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:86953200-86954600	Enhancers	Placenta	Placenta
45	chr4:86953200-86954800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:86953200-86955200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:86953200-86955200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr4:86953200-86957000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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