Variant report

Variant	rs72662010
Chromosome Location	chr4:86972358-86972359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1469870	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57104166	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60270707	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66850367	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67161777	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72660188	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72660194	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72660195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72660197	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72660198	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72660199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72660200	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662011	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72662012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662023	0.81[EUR][1000 genomes]
rs7686599	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv998531	chr4:86966103-86980077	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv511259	chr4:86966327-86983232	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1004688	chr4:86970230-86983232	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:86958200-86975600	Weak transcription	Fetal Brain Female	brain
8	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
9	chr4:86961200-86979400	Weak transcription	Fetal Stomach	stomach
10	chr4:86961200-86981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:86963600-86974400	Weak transcription	Fetal Lung	lung
12	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:86965200-86976200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
15	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
16	chr4:86969200-86972600	Enhancers	HMEC	breast
17	chr4:86970000-86988400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:86970200-86977000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:86970400-86975400	Weak transcription	NHDF-Ad	bronchial
20	chr4:86970400-86975600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:86970800-86978000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:86971800-87003800	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:86972000-86975600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:86972200-86977000	Weak transcription	NHEK	skin

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