Variant report

Variant	rs72660777
Chromosome Location	chr5:106928333-106928334
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10037733	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056406	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948614	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11951213	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952039	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11952705	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955029	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957859	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13358500	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345773	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35697211	1.00[ASN][1000 genomes]
rs3864266	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3864267	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67289942	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878320	1.00[ASN][1000 genomes]
rs6892545	1.00[ASN][1000 genomes]
rs6898233	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72660773	1.00[ASN][1000 genomes]
rs72660774	1.00[ASN][1000 genomes]
rs72660775	1.00[ASN][1000 genomes]
rs72660776	1.00[ASN][1000 genomes]
rs72660778	0.84[ASN][1000 genomes]
rs9328005	1.00[ASN][1000 genomes]
rs9328007	1.00[ASN][1000 genomes]
rs9328008	1.00[ASN][1000 genomes]
rs9328009	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv3398438	chr5:106926753-106928901	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3436609	chr5:106927203-106928401	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106913600-106928800	Weak transcription	Right Ventricle	heart
2	chr5:106915200-106929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:106917000-106929200	Weak transcription	HMEC	breast
4	chr5:106917800-106928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:106920800-106928400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:106924800-106928400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:106925000-106928600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:106926000-106928600	Weak transcription	Fetal Stomach	stomach
9	chr5:106926000-106931400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:106926000-106941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr5:106926200-106928400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:106926400-106928800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:106926800-106930000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:106927200-106930000	Weak transcription	Esophagus	oesophagus
15	chr5:106927800-106930000	Weak transcription	Stomach Mucosa	stomach
16	chr5:106928000-106928600	Enhancers	GM12878-XiMat	blood
17	chr5:106928000-106929200	Enhancers	HSMMtube	muscle
18	chr5:106928000-106930600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:106928000-106931200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:106928200-106928600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr5:106928200-106928800	Enhancers	Fetal Brain Male	brain
22	chr5:106928200-106929000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:106928200-106929000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:106928200-106929000	Enhancers	Brain Anterior Caudate	brain
25	chr5:106928200-106929000	Enhancers	Brain Substantia Nigra	brain
26	chr5:106928200-106929200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:106928200-106929200	Enhancers	Fetal Brain Female	brain
28	chr5:106928200-106929400	Enhancers	Brain Angular Gyrus	brain
29	chr5:106928200-106929400	Genic enhancers	A549	lung
30	chr5:106928200-106930200	Enhancers	Brain Cingulate Gyrus	brain
31	chr5:106928200-106930200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr5:106928200-106930200	Enhancers	Fetal Muscle Leg	muscle
33	chr5:106928200-106930600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:106928200-106930600	Enhancers	Left Ventricle	heart
35	chr5:106928200-106930800	Enhancers	Fetal Heart	heart
36	chr5:106928200-106931000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links