Variant report

Variant	rs6892545
Chromosome Location	chr5:106926418-106926419
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106914216..106916170-chr5:106926052..106928145,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10035128	1.00[AMR][1000 genomes]
rs10035579	1.00[AMR][1000 genomes]
rs10037733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10045106	1.00[AMR][1000 genomes]
rs10052756	1.00[AMR][1000 genomes]
rs10056406	1.00[ASN][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs11948614	1.00[ASN][1000 genomes]
rs11951213	1.00[ASN][1000 genomes]
rs11952039	1.00[ASN][1000 genomes]
rs11952705	1.00[ASN][1000 genomes]
rs11955029	1.00[ASN][1000 genomes]
rs11957859	1.00[ASN][1000 genomes]
rs13358500	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1345773	1.00[ASN][1000 genomes]
rs28786975	1.00[AMR][1000 genomes]
rs28820603	1.00[AMR][1000 genomes]
rs28833173	1.00[AMR][1000 genomes]
rs35697211	1.00[ASN][1000 genomes]
rs3864266	1.00[ASN][1000 genomes]
rs3864267	0.91[ASN][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs67289942	1.00[ASN][1000 genomes]
rs6878320	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6895165	1.00[CHB][hapmap]
rs6896050	1.00[AMR][1000 genomes]
rs6898233	1.00[ASN][1000 genomes]
rs72660773	1.00[ASN][1000 genomes]
rs72660774	1.00[ASN][1000 genomes]
rs72660775	1.00[ASN][1000 genomes]
rs72660776	1.00[ASN][1000 genomes]
rs72660777	1.00[ASN][1000 genomes]
rs72660778	0.84[ASN][1000 genomes]
rs7700859	1.00[AMR][1000 genomes]
rs7712599	1.00[AMR][1000 genomes]
rs9328005	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9328006	1.00[CHB][hapmap]
rs9328007	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9328008	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9328009	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106913600-106928800	Weak transcription	Right Ventricle	heart
2	chr5:106914800-106928200	Weak transcription	Left Ventricle	heart
3	chr5:106915200-106929800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:106915600-106928200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106917000-106929200	Weak transcription	HMEC	breast
6	chr5:106917400-106928000	Weak transcription	HSMMtube	muscle
7	chr5:106917600-106928200	Weak transcription	A549	lung
8	chr5:106917800-106928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:106919800-106928200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:106920800-106928400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:106924000-106926800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:106924000-106928000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:106924800-106928400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:106925000-106928200	Weak transcription	Fetal Muscle Leg	muscle
15	chr5:106925000-106928600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:106926000-106926600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:106926000-106928200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:106926000-106928600	Weak transcription	Fetal Stomach	stomach
19	chr5:106926000-106931400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:106926000-106941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:106926200-106928400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:106926400-106928800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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