Variant report

Variant	rs10076670
Chromosome Location	chr5:106989496-106989497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10035128	1.00[AMR][1000 genomes]
rs10035579	1.00[AMR][1000 genomes]
rs10045106	1.00[AMR][1000 genomes]
rs10052756	1.00[AMR][1000 genomes]
rs10069296	1.00[EUR][1000 genomes]
rs10077954	1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs17160525	1.00[EUR][1000 genomes]
rs28637101	1.00[EUR][1000 genomes]
rs28786975	1.00[AMR][1000 genomes]
rs28820603	1.00[AMR][1000 genomes]
rs28833173	1.00[AMR][1000 genomes]
rs55683430	1.00[EUR][1000 genomes]
rs55822560	1.00[EUR][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs6870284	1.00[EUR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73202764	1.00[EUR][1000 genomes]
rs73780421	1.00[EUR][1000 genomes]
rs7700859	1.00[AMR][1000 genomes]
rs7712599	1.00[AMR][1000 genomes]
rs7728813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
2	chr5:106982400-106990200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:106983600-106990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:106984400-106991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:106985800-106992000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:106986000-106992200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr5:106986400-106993600	Enhancers	A549	lung
8	chr5:106986800-106991400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:106987200-106990000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:106987600-107001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr5:106988000-106989600	Enhancers	Fetal Lung	lung
12	chr5:106988000-106992200	Enhancers	Fetal Heart	heart
13	chr5:106988200-106992200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:106988400-106990000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:106988600-106990000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:106988800-106989600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:106988800-106989600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr5:106988800-106989800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:106988800-106989800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:106988800-106990200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr5:106989000-106989600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr5:106989000-106989800	Enhancers	Stomach Mucosa	stomach
23	chr5:106989000-106992200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr5:106989200-106989600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr5:106989200-106991600	Weak transcription	Aorta	Aorta
26	chr5:106989200-106992200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:106989200-106997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:106989400-106990000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:106989400-106990400	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links