Variant report

Variant	rs10052756
Chromosome Location	chr5:106997949-106997950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035128	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045106	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs28786975	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[AMR][1000 genomes]
rs7700859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7712599	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106987600-107001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach
4	chr5:106989600-107002000	Weak transcription	Fetal Lung	lung
5	chr5:106991800-107001000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:106992000-107001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:106992000-107002000	Weak transcription	HMEC	breast
8	chr5:106992200-106999600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:106992200-107000400	Weak transcription	Fetal Heart	heart
10	chr5:106992200-107000800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:106992200-107002000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:106993800-106998200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:106995000-106998200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:106995800-106998200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:106996600-106998000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:106997000-106998000	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr5:106997000-106998200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:106997200-107000800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:106997200-107004200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:106997400-106998000	Active TSS	GM12878-XiMat	blood
21	chr5:106997400-107000800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:106997400-107000800	Weak transcription	Left Ventricle	heart
23	chr5:106997400-107001000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:106997400-107004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:106997400-107004600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr5:106997600-107000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr5:106997600-107001000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:106997800-106998000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr5:106997800-106998400	Enhancers	A549	lung

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