Variant report

Variant	rs60262497
Chromosome Location	chr5:106842828-106842829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035128	1.00[AMR][1000 genomes]
rs10035579	1.00[AMR][1000 genomes]
rs10045106	1.00[AMR][1000 genomes]
rs10052756	1.00[AMR][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs28786975	1.00[AMR][1000 genomes]
rs28820603	1.00[AMR][1000 genomes]
rs28833173	1.00[AMR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[AMR][1000 genomes]
rs7700859	1.00[AMR][1000 genomes]
rs7712599	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106834400-106848600	Weak transcription	HMEC	breast
2	chr5:106836400-106855800	Weak transcription	Aorta	Aorta
3	chr5:106838200-106848600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:106838200-106850000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:106838400-106845600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:106838400-106848600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:106838400-106851800	Weak transcription	NHDF-Ad	bronchial
8	chr5:106838600-106843800	Weak transcription	Left Ventricle	heart
9	chr5:106838600-106850600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:106838600-106855600	Weak transcription	Right Ventricle	heart
11	chr5:106838800-106843200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:106838800-106847800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:106838800-106848600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:106839200-106847600	Weak transcription	Dnd41	blood
15	chr5:106839200-106855600	Weak transcription	HSMM	muscle
16	chr5:106841200-106843800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:106841600-106845600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:106841800-106845600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:106842000-106843800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:106842000-106843800	Weak transcription	Fetal Lung	lung
21	chr5:106842000-106845400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:106842000-106845600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr5:106842000-106845600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:106842000-106848800	Weak transcription	Fetal Stomach	stomach
25	chr5:106842200-106843600	Weak transcription	Fetal Heart	heart
26	chr5:106842200-106843800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr5:106842200-106845600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:106842200-106845600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:106842200-106847800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:106842200-106848200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr5:106842400-106843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr5:106842400-106843200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:106842400-106843600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr5:106842400-106843800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:106842400-106843800	Enhancers	A549	lung
36	chr5:106842400-106845600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr5:106842400-106845800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr5:106842400-106880000	Weak transcription	Gastric	stomach
39	chr5:106842600-106843600	Weak transcription	Liver	Liver
40	chr5:106842600-106844800	Weak transcription	Stomach Mucosa	stomach

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