Variant report

Variant	rs10078962
Chromosome Location	chr5:106956072-106956073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106955302..106958029-chr5:107006290..107008024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10035128	1.00[AMR][1000 genomes]
rs10035579	1.00[AMR][1000 genomes]
rs10045106	1.00[AMR][1000 genomes]
rs10052756	1.00[AMR][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	1.00[AMR][1000 genomes]
rs28786975	1.00[AMR][1000 genomes]
rs28820603	1.00[AMR][1000 genomes]
rs28833173	1.00[AMR][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7700859	1.00[AMR][1000 genomes]
rs7712599	1.00[AMR][1000 genomes]
rs9328014	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
4	chr5:106951000-106956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:106953200-106956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:106953200-106959600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr5:106953400-106957000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:106953600-106962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:106954200-106956800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:106954200-106967600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:106954400-106956800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:106954800-106959400	Weak transcription	Fetal Heart	heart
14	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:106955600-106956200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:106955600-106956200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr5:106955600-106956400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr5:106955600-106956400	Enhancers	Fetal Brain Male	brain
19	chr5:106956000-106956400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:106956000-106956400	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr5:106956000-106968200	Weak transcription	A549	lung

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