Variant report

Variant	rs10035128
Chromosome Location	chr5:107013550-107013551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052756	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs28786975	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[AMR][1000 genomes]
rs7700859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7712599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107009400-107023200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:107009600-107015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107009600-107018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107009800-107017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107010000-107018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:107010400-107016400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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