Variant report

Variant	rs28786975
Chromosome Location	chr5:107027779-107027780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035128	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035579	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045106	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs28820603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[AMR][1000 genomes]
rs7700859	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7712599	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107018800-107029000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:107024400-107032200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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