Variant report

Variant	rs7700859
Chromosome Location	chr5:107010331-107010332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr5:107010316-107010793	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:64618740..64621100-chr5:107008124..107011007,2	MCF-7	breast:
2	chr5:106763769..106766443-chr5:107007401..107010371,2	MCF-7	breast:
3	chr5:107005443..107007436-chr5:107008039..107010506,2	MCF-7	breast:

Variant related genes	Relation type
EFNA5	TF binding region
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10035579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10052756	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10076670	1.00[AMR][1000 genomes]
rs10077954	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10078962	1.00[AMR][1000 genomes]
rs28786975	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28820603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28833173	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60262497	1.00[AMR][1000 genomes]
rs6878320	1.00[AMR][1000 genomes]
rs6892545	1.00[AMR][1000 genomes]
rs6896050	1.00[AMR][1000 genomes]
rs7712599	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107009400-107011200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:107009400-107023200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:107009600-107010400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:107009600-107010400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:107009600-107011200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:107009600-107011200	Enhancers	HMEC	breast
7	chr5:107009600-107015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107009600-107018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:107009800-107010600	Enhancers	Hela-S3	cervix
10	chr5:107009800-107010800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:107009800-107011600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:107009800-107017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:107010000-107010800	Enhancers	A549	lung
14	chr5:107010000-107010800	Enhancers	NHEK	skin
15	chr5:107010000-107011200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:107010000-107011400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr5:107010000-107011600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:107010000-107011600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:107010000-107018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:107010200-107011000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:107010200-107011600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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