Variant report

Variant	rs10069296
Chromosome Location	chr5:106995913-106995914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10076670	1.00[EUR][1000 genomes]
rs17160525	1.00[EUR][1000 genomes]
rs28637101	1.00[EUR][1000 genomes]
rs55683430	1.00[EUR][1000 genomes]
rs55822560	1.00[EUR][1000 genomes]
rs6870284	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6896050	1.00[EUR][1000 genomes]
rs73202764	1.00[EUR][1000 genomes]
rs73780421	1.00[EUR][1000 genomes]
rs7728813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106987600-107001000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:106989200-106997000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:106989200-107003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:106989400-107004000	Weak transcription	Fetal Stomach	stomach
5	chr5:106989600-106997800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:106989600-107002000	Weak transcription	Fetal Lung	lung
7	chr5:106989800-106997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:106990400-106997000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr5:106991800-106996200	Weak transcription	GM12878-XiMat	blood
10	chr5:106991800-106996800	Weak transcription	Left Ventricle	heart
11	chr5:106991800-107001000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr5:106992000-106996600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:106992000-107001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:106992000-107002000	Weak transcription	HMEC	breast
15	chr5:106992200-106996400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:106992200-106996600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:106992200-106996800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:106992200-106997000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:106992200-106999600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr5:106992200-107000400	Weak transcription	Fetal Heart	heart
21	chr5:106992200-107000800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:106992200-107002000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:106993800-106998200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:106994600-106996400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:106994600-106997800	Weak transcription	A549	lung
26	chr5:106994800-106997000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:106995000-106998200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:106995800-106998200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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