Variant report

Variant	rs55822560
Chromosome Location	chr5:107136829-107136830
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10069296	1.00[EUR][1000 genomes]
rs10076670	1.00[EUR][1000 genomes]
rs17160525	1.00[EUR][1000 genomes]
rs28637101	1.00[EUR][1000 genomes]
rs55683430	1.00[EUR][1000 genomes]
rs6870284	1.00[EUR][1000 genomes]
rs6896050	1.00[EUR][1000 genomes]
rs73202764	1.00[EUR][1000 genomes]
rs73780421	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7728813	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv969928	chr5:107132237-107143800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107130800-107140400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:107135400-107137000	Enhancers	Primary T cells from cord blood	blood
3	chr5:107135400-107137800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr5:107135400-107138400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107135400-107140600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:107135400-107143000	Weak transcription	Right Atrium	heart
7	chr5:107135600-107140800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:107135600-107140800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:107135800-107140400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:107135800-107140600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:107135800-107140800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:107135800-107140800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:107135800-107141400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:107136000-107140400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:107136000-107141000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:107136200-107140400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:107136400-107140200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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