Variant report

Variant	rs72661150
Chromosome Location	chr18:45366210-45366211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3813070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72661145	1.00[EUR][1000 genomes]
rs72661146	1.00[EUR][1000 genomes]
rs72661152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057722	chr18:45343965-45401360	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1058673	chr18:45360012-45404492	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1059186	chr18:45360012-45407405	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45340400-45369400	Weak transcription	Fetal Stomach	stomach
2	chr18:45342200-45384200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:45344000-45373000	Weak transcription	Pancreas	Pancrea
4	chr18:45344600-45368000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr18:45345000-45368000	Weak transcription	Colon Smooth Muscle	Colon
6	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:45347600-45381800	Weak transcription	Right Ventricle	heart
8	chr18:45350800-45367600	Weak transcription	K562	blood
9	chr18:45351000-45374600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr18:45351800-45367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr18:45353000-45381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:45354600-45381800	Weak transcription	Fetal Intestine Small	intestine
13	chr18:45354800-45370800	Weak transcription	Fetal Brain Male	brain
14	chr18:45355000-45368800	Weak transcription	Brain Germinal Matrix	brain
15	chr18:45355600-45368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:45355600-45375600	Strong transcription	Hela-S3	cervix
17	chr18:45355600-45375800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr18:45355600-45376200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:45356000-45378000	Weak transcription	Small Intestine	intestine
20	chr18:45356200-45377800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:45356200-45384000	Weak transcription	Spleen	Spleen
22	chr18:45356600-45376200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr18:45357200-45370000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr18:45357200-45373200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr18:45358600-45376400	Strong transcription	Dnd41	blood
26	chr18:45358800-45382400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr18:45359000-45374400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr18:45359800-45370000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr18:45359800-45375600	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr18:45359800-45375600	Strong transcription	Fetal Thymus	thymus
31	chr18:45360000-45373200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:45360000-45375400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr18:45360000-45375600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr18:45361400-45375600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr18:45361400-45375600	Strong transcription	A549	lung
36	chr18:45361400-45376000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr18:45362400-45366400	Strong transcription	HSMM	muscle
38	chr18:45362400-45373000	Strong transcription	Placenta	Placenta
39	chr18:45362400-45375200	Strong transcription	Primary B cells from cord blood	blood
40	chr18:45362400-45375600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr18:45362600-45368000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr18:45362600-45371800	Strong transcription	Liver	Liver
43	chr18:45362600-45372400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr18:45362600-45375600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr18:45363000-45368400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr18:45363000-45370000	Strong transcription	Primary T cells from cord blood	blood
47	chr18:45363000-45375800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr18:45363200-45371000	Weak transcription	HMEC	breast
49	chr18:45363400-45373600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr18:45363800-45368000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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