Variant report

Variant	rs72662502
Chromosome Location	chr8:59227824-59227825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56122902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662476	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72662477	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72662479	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72662481	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72662486	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72665320	0.95[AMR][1000 genomes]
rs72665326	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59224200-59228600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr8:59225600-59230800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:59227400-59228000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:59227400-59228000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:59227400-59229000	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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