Variant report

Variant	rs72665320
Chromosome Location	chr8:59307759-59307760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56122902	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs72662476	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72662477	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs72662479	0.89[AMR][1000 genomes]
rs72662481	0.89[AMR][1000 genomes]
rs72662486	0.95[AMR][1000 genomes]
rs72662502	0.95[AMR][1000 genomes]
rs72665326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv438058	chr8:59305833-59318448	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59305600-59309000	Weak transcription	Right Atrium	heart
2	chr8:59305800-59308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:59305800-59308200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr8:59306000-59308000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:59307000-59308000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:59307200-59307800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:59307400-59307800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:59307400-59308200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:59307400-59308200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:59307400-59308400	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:59307400-59308600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr8:59307400-59309400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr8:59307400-59309600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr8:59307600-59308600	Enhancers	Fetal Brain Male	brain
15	chr8:59307600-59309800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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