Variant report
| Variant | rs72663840 |
|---|---|
| Chromosome Location | chr8:64369432-64369433 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NKAIN3-6 | chr8:64369316-64369530 | XLOC_006820 |
| 2 | lnc-NKAIN3-6 | chr8:64369316-64369771 | NONHSAT126938 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs61739457 | 0.91[EUR][1000 genomes] |
| rs62511467 | 0.91[EUR][1000 genomes] |
| rs72663828 | 1.00[EUR][1000 genomes] |
| rs72663834 | 1.00[EUR][1000 genomes] |
| rs72663855 | 0.91[EUR][1000 genomes] |
| rs72663857 | 0.91[EUR][1000 genomes] |
| rs72663861 | 0.91[EUR][1000 genomes] |
| rs72663862 | 0.91[EUR][1000 genomes] |
| rs72663868 | 0.91[EUR][1000 genomes] |
| rs72663874 | 0.91[EUR][1000 genomes] |
| rs72665543 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890967 | chr8:64107847-64454446 | Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
