Variant report

Variant	rs72664373
Chromosome Location	chr1:57026262-57026263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:57023598..57027518-chr1:57041775..57046465,4	MCF-7	breast:
2	chr1:56882273..56884724-chr1:57025376..57027703,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162407	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11206846	0.96[ASN][1000 genomes]
rs11800865	0.84[ASN][1000 genomes]
rs11800883	0.93[ASN][1000 genomes]
rs11810635	0.96[ASN][1000 genomes]
rs1572058	0.96[ASN][1000 genomes]
rs28673510	0.96[ASN][1000 genomes]
rs41446844	0.96[ASN][1000 genomes]
rs56332336	0.96[ASN][1000 genomes]
rs6661359	0.96[ASN][1000 genomes]
rs6699960	0.87[ASN][1000 genomes]
rs72664400	0.87[ASN][1000 genomes]
rs7539051	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57007400-57028400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:57009600-57028000	Weak transcription	Fetal Kidney	kidney
3	chr1:57016000-57038600	Weak transcription	HSMMtube	muscle
4	chr1:57017400-57035400	Weak transcription	Esophagus	oesophagus
5	chr1:57017400-57035400	Weak transcription	Fetal Thymus	thymus
6	chr1:57017400-57039400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:57017800-57028200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:57017800-57028600	Weak transcription	Pancreas	Pancrea
9	chr1:57017800-57040800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:57019200-57027800	Weak transcription	Fetal Brain Female	brain
11	chr1:57019200-57028400	Weak transcription	Aorta	Aorta
12	chr1:57019200-57030400	Weak transcription	HSMM	muscle
13	chr1:57019400-57027400	Weak transcription	Lung	lung
14	chr1:57019400-57027600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:57019400-57030000	Weak transcription	Osteobl	bone
16	chr1:57019400-57030200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:57019600-57027000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:57019600-57027400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:57019600-57027800	Weak transcription	Fetal Brain Male	brain
20	chr1:57019600-57028000	Weak transcription	Fetal Lung	lung
21	chr1:57019600-57028400	Enhancers	Liver	Liver
22	chr1:57019800-57031400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr1:57020000-57028000	Weak transcription	Colon Smooth Muscle	Colon
24	chr1:57020000-57028800	Weak transcription	Stomach Mucosa	stomach
25	chr1:57020200-57031800	Weak transcription	Placenta	Placenta
26	chr1:57020400-57029000	Weak transcription	Fetal Stomach	stomach
27	chr1:57021200-57027800	Weak transcription	NHLF	lung
28	chr1:57021400-57028600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr1:57021400-57028600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:57021400-57032800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:57021800-57027800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:57022000-57030400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr1:57022400-57027400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr1:57022600-57028600	Weak transcription	Spleen	Spleen
35	chr1:57023000-57026400	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr1:57023200-57026400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:57023200-57026400	Enhancers	Brain Cingulate Gyrus	brain
38	chr1:57023800-57027400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:57023800-57027400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:57023800-57027400	Weak transcription	Left Ventricle	heart
41	chr1:57023800-57027800	Weak transcription	Adipose Nuclei	Adipose
42	chr1:57023800-57028600	Enhancers	HepG2	liver
43	chr1:57023800-57030400	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr1:57023800-57033000	Enhancers	Brain Hippocampus Middle	brain
45	chr1:57024200-57028000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:57024200-57028200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:57024200-57029000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:57024200-57030000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr1:57024200-57030600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr1:57024200-57030600	Weak transcription	Fetal Muscle Leg	muscle

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