Variant report

Variant	rs72664400
Chromosome Location	chr1:57057962-57057963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11206846	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11800883	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11810635	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1572058	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28673510	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41446844	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56332336	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6661359	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6699960	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72664373	0.87[ASN][1000 genomes]
rs7539051	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv528673	chr1:57048961-57059571	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57056000-57058000	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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