Variant report

Variant	rs72664629
Chromosome Location	chr8:96179827-96179828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:96166764..96169132-chr8:96179225..96180943,2	MCF-7	breast:
2	chr8:96177824..96181231-chr8:96189116..96192785,4	MCF-7	breast:
3	chr8:96145285..96148015-chr8:96178235..96179850,3	K562	blood:
4	chr8:96119610..96121768-chr8:96178748..96180708,2	MCF-7	breast:
5	chr8:96177802..96180258-chr8:96258516..96260057,2	K562	blood:
6	chr8:96176079..96177836-chr8:96178226..96179976,2	MCF-7	breast:
7	chr8:96178646..96181136-chr8:96187037..96188872,2	MCF-7	breast:
8	chr8:96174791..96177726-chr8:96179691..96182819,4	K562	blood:
9	chr8:96144803..96147241-chr8:96177973..96180703,2	MCF-7	breast:
10	chr8:96164336..96168740-chr8:96176663..96180885,5	K562	blood:
11	chr8:96153632..96156778-chr8:96178221..96180911,3	MCF-7	breast:
12	chr8:96035720..96038305-chr8:96178679..96180500,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000156170	Chromatin interaction
ENSG00000175895	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72664642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96167200-96181600	Weak transcription	Small Intestine	intestine
2	chr8:96167600-96180600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:96167600-96181400	Weak transcription	Liver	Liver
4	chr8:96169400-96181000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:96170000-96180200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:96170200-96181000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:96172200-96182600	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:96172400-96180600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:96172400-96181600	Weak transcription	Lung	lung
10	chr8:96172600-96180600	Weak transcription	Fetal Intestine Small	intestine
11	chr8:96172600-96181000	Weak transcription	Spleen	Spleen
12	chr8:96172600-96181800	Weak transcription	Pancreas	Pancrea
13	chr8:96172600-96186400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:96172600-96186800	Weak transcription	Gastric	stomach
15	chr8:96176200-96180800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:96176200-96181000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr8:96176200-96181200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:96176200-96181400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:96176400-96180600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:96176400-96180600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:96176400-96181000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:96176400-96190200	Weak transcription	Fetal Thymus	thymus
23	chr8:96176600-96181000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr8:96177600-96182400	Enhancers	Primary B cells from cord blood	blood
25	chr8:96177800-96182400	Enhancers	Fetal Muscle Leg	muscle
26	chr8:96178400-96181000	Weak transcription	GM12878-XiMat	blood
27	chr8:96179200-96180000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:96179200-96180000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr8:96179200-96180200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:96179200-96180400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr8:96179200-96180400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr8:96179200-96180800	Enhancers	Fetal Brain Female	brain
33	chr8:96179200-96181000	Enhancers	Right Ventricle	heart
34	chr8:96179400-96180000	Enhancers	H1 Cell Line	embryonic stem cell
35	chr8:96179400-96180000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:96179400-96180000	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr8:96179400-96180000	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr8:96179400-96180000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr8:96179400-96180000	Enhancers	Brain Angular Gyrus	brain
40	chr8:96179400-96180000	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr8:96179400-96180200	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr8:96179400-96180400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr8:96179400-96180800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:96179400-96181200	Enhancers	K562	blood
45	chr8:96179400-96181400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr8:96179400-96181800	Enhancers	Fetal Brain Male	brain
47	chr8:96179400-96182400	Enhancers	Esophagus	oesophagus
48	chr8:96179600-96180000	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr8:96179600-96180000	Bivalent Enhancer	HSMMtube	muscle
50	chr8:96179600-96180200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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