Variant report

Variant	rs72664642
Chromosome Location	chr8:96188002-96188003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96186292..96188622-chr8:96201529..96203684,2	MCF-7	breast:
2	chr8:96186449..96188283-chr8:96189902..96192227,2	MCF-7	breast:
3	chr8:96178646..96181136-chr8:96187037..96188872,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10093480	1.00[ASN][1000 genomes]
rs72664629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96176400-96190200	Weak transcription	Fetal Thymus	thymus
2	chr8:96182400-96188400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:96185800-96188200	Enhancers	Fetal Brain Male	brain
4	chr8:96186600-96188200	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:96186600-96188200	Flanking Bivalent TSS/Enh	HepG2	liver
6	chr8:96186600-96189200	Enhancers	Fetal Kidney	kidney
7	chr8:96186800-96188200	Enhancers	Fetal Lung	lung
8	chr8:96187000-96191000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:96187200-96188200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:96187200-96188400	Enhancers	Brain Germinal Matrix	brain
11	chr8:96187200-96188400	Enhancers	Fetal Intestine Large	intestine
12	chr8:96187200-96188400	Enhancers	Fetal Intestine Small	intestine
13	chr8:96187200-96190200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:96187200-96191200	Weak transcription	Brain Anterior Caudate	brain
15	chr8:96187200-96194000	Weak transcription	Pancreas	Pancrea
16	chr8:96187400-96188200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:96187400-96188400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:96187400-96188400	Enhancers	Liver	Liver
19	chr8:96187400-96188800	Enhancers	Primary B cells from cord blood	blood
20	chr8:96187400-96191200	Weak transcription	Placenta	Placenta
21	chr8:96187400-96192000	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:96187800-96188200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:96187800-96193200	Weak transcription	K562	blood
24	chr8:96188000-96188200	Enhancers	Gastric	stomach
25	chr8:96188000-96191200	Weak transcription	Fetal Brain Female	brain
26	chr8:96188000-96192000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:96188000-96192200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:96188000-96197000	Enhancers	Primary B cells from peripheral blood	blood

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