Variant report

Variant	rs10093480
Chromosome Location	chr8:96193895-96193896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96192843..96194703-chr8:96238022..96240558,2	K562	blood:
2	chr8:96193202..96196443-chr8:96200197..96204026,3	MCF-7	breast:
3	chr8:96193502..96195536-chr8:96195710..96197348,2	MCF-7	breast:
4	chr8:96182589..96184154-chr8:96193538..96196493,2	MCF-7	breast:
5	chr8:96193279..96197671-chr8:96202932..96206464,6	MCF-7	breast:
6	chr8:96193875..96195521-chr8:96197037..96198650,2	K562	blood:
7	chr8:96149528..96152300-chr8:96192170..96194138,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11773989	0.83[EUR][1000 genomes]
rs11781098	0.83[EUR][1000 genomes]
rs11784608	0.83[EUR][1000 genomes]
rs11786763	0.86[EUR][1000 genomes]
rs16893796	1.00[CHB][hapmap]
rs16917429	1.00[CHB][hapmap]
rs17730693	0.89[EUR][1000 genomes]
rs2055056	1.00[CHB][hapmap]
rs2165498	1.00[CHB][hapmap]
rs28671435	0.87[EUR][1000 genomes]
rs6984009	1.00[CHB][hapmap]
rs7003496	1.00[CHB][hapmap]
rs72664642	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96187200-96194000	Weak transcription	Pancreas	Pancrea
2	chr8:96188000-96197000	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:96190200-96195000	Enhancers	Fetal Thymus	thymus
4	chr8:96191000-96195000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:96191200-96195000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:96191400-96194200	Weak transcription	Placenta	Placenta
7	chr8:96191600-96202200	Weak transcription	Aorta	Aorta
8	chr8:96192600-96194200	Enhancers	Adipose Nuclei	Adipose
9	chr8:96193200-96194200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr8:96193200-96194400	Enhancers	K562	blood
11	chr8:96193200-96196000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:96193400-96194200	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:96193400-96194200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr8:96193400-96194200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:96193400-96194400	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:96193400-96194400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:96193400-96194400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:96193400-96194400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr8:96193400-96194400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:96193400-96194400	Enhancers	Left Ventricle	heart
21	chr8:96193400-96194600	Enhancers	Dnd41	blood
22	chr8:96193400-96195000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr8:96193400-96195000	Enhancers	Thymus	Thymus
24	chr8:96193600-96194000	Enhancers	Fetal Muscle Trunk	muscle
25	chr8:96193600-96194000	Enhancers	Lung	lung
26	chr8:96193600-96194000	Flanking Active TSS	GM12878-XiMat	blood
27	chr8:96193600-96194000	Flanking Active TSS	HepG2	liver
28	chr8:96193600-96194200	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr8:96193600-96194200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr8:96193600-96194600	Enhancers	Primary T cells from cord blood	blood
31	chr8:96193800-96194200	Enhancers	Right Ventricle	heart
32	chr8:96193800-96194200	Enhancers	Spleen	Spleen
33	chr8:96193800-96194800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links