Variant report

Variant	rs17730693
Chromosome Location	chr8:96199585-96199586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10093480	0.89[EUR][1000 genomes]
rs11773989	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779506	1.00[ASW][hapmap]
rs11781098	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784608	1.00[CHB][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786763	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987468	1.00[CHB][hapmap]
rs28671435	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829466	1.00[YRI][hapmap]
rs9297953	0.90[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96191600-96202200	Weak transcription	Aorta	Aorta
2	chr8:96194400-96203000	Weak transcription	Placenta	Placenta
3	chr8:96195000-96201800	Weak transcription	Fetal Thymus	thymus
4	chr8:96195000-96202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:96196000-96202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:96196800-96202600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:96198000-96205000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:96199200-96199600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:96199200-96199800	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:96199200-96202600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:96199400-96199800	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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