Variant report

Variant	rs11781098
Chromosome Location	chr8:96202454-96202455
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:96200453..96203080-chr8:96203459..96205990,2	K562	blood:
2	chr8:96197860..96200362-chr8:96201805..96203438,3	MCF-7	breast:
3	chr8:96201331..96202935-chr8:96212671..96215830,3	K562	blood:
4	chr8:96166537..96168297-chr8:96201456..96204172,2	MCF-7	breast:
5	chr8:96201546..96203086-chr8:96222450..96224514,2	MCF-7	breast:
6	chr8:96145592..96149916-chr8:96202019..96205363,5	MCF-7	breast:
7	chr8:96201649..96205216-chr8:96206550..96209721,4	MCF-7	breast:
8	chr8:96124203..96126069-chr8:96202239..96204530,2	MCF-7	breast:
9	chr8:96186292..96188622-chr8:96201529..96203684,2	MCF-7	breast:
10	chr8:96193202..96196443-chr8:96200197..96204026,3	MCF-7	breast:
11	chr8:95907850..95910345-chr8:96201728..96204034,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10093480	0.83[EUR][1000 genomes]
rs11773989	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11784608	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11786763	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987468	1.00[CHB][hapmap]
rs17730693	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28671435	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297953	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96194400-96203000	Weak transcription	Placenta	Placenta
2	chr8:96195000-96202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:96196000-96202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:96196800-96202600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:96198000-96205000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:96199200-96202600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:96199800-96202800	Weak transcription	Primary B cells from cord blood	blood
8	chr8:96200400-96202600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr8:96201800-96203000	Enhancers	Spleen	Spleen
10	chr8:96201800-96203400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:96201800-96205600	Enhancers	HMEC	breast
12	chr8:96201800-96205800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:96201800-96206800	Enhancers	Fetal Thymus	thymus
14	chr8:96202200-96202600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:96202400-96202800	Enhancers	Hela-S3	cervix
16	chr8:96202400-96203200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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