Variant report

Variant	rs72667324
Chromosome Location	chr1:62865065-62865066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4915835	1.00[ASN][1000 genomes]
rs55744543	1.00[ASN][1000 genomes]
rs72667323	1.00[ASN][1000 genomes]
rs72667353	1.00[ASN][1000 genomes]
rs72667365	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72667367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7554876	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62848000-62871800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:62861000-62865600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:62861200-62866600	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:62862800-62866400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:62863000-62866400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:62863000-62866400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:62863200-62866400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:62863200-62866400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:62864800-62865400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:62864800-62869600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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