Variant report

Variant	rs7554876
Chromosome Location	chr1:62891380-62891381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4915835	1.00[ASN][1000 genomes]
rs55744543	1.00[ASN][1000 genomes]
rs72667323	1.00[ASN][1000 genomes]
rs72667324	1.00[ASN][1000 genomes]
rs72667353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013582	chr1:62723703-62910632	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:62889200-62891400	Enhancers	Fetal Intestine Small	intestine
2	chr1:62890000-62891400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:62890000-62891600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:62890200-62892600	Enhancers	HMEC	breast
5	chr1:62890200-62892800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:62890400-62891600	Enhancers	HepG2	liver
7	chr1:62890400-62892600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:62890600-62894800	Weak transcription	HSMMtube	muscle
9	chr1:62890600-62899400	Weak transcription	HSMM	muscle
10	chr1:62890600-62901000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:62891000-62891800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:62891000-62891800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:62891000-62892600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:62891000-62901000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:62891000-62901000	Weak transcription	NHEK	skin
16	chr1:62891200-62892200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:62891200-62892200	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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