Variant report

Variant	rs72668912
Chromosome Location	chr4:122173156-122173157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10030846	1.00[EUR][1000 genomes]
rs17051303	1.00[EUR][1000 genomes]
rs17051304	1.00[EUR][1000 genomes]
rs17051306	1.00[EUR][1000 genomes]
rs17051309	1.00[EUR][1000 genomes]
rs17051311	1.00[EUR][1000 genomes]
rs17051312	1.00[EUR][1000 genomes]
rs17051313	1.00[EUR][1000 genomes]
rs17051314	1.00[EUR][1000 genomes]
rs17051315	1.00[EUR][1000 genomes]
rs17051316	1.00[EUR][1000 genomes]
rs28380115	1.00[EUR][1000 genomes]
rs28465139	1.00[EUR][1000 genomes]
rs28562240	1.00[EUR][1000 genomes]
rs6837539	1.00[EUR][1000 genomes]
rs73847413	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv879861	chr4:122126808-122181277	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv4493	chr4:122163743-122185981	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122165400-122173600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr4:122168200-122173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:122170800-122179400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:122172000-122174000	Enhancers	Primary T cells from cord blood	blood
5	chr4:122172600-122173400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr4:122172600-122174600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr4:122172800-122173800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr4:122172800-122174000	Enhancers	Fetal Lung	lung
9	chr4:122173000-122173200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:122173000-122174000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:122173000-122177000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:122173000-122178600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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