Variant report

Variant	rs73847413
Chromosome Location	chr4:122061767-122061768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10030846	1.00[EUR][1000 genomes]
rs17051303	1.00[EUR][1000 genomes]
rs17051304	1.00[EUR][1000 genomes]
rs17051306	1.00[EUR][1000 genomes]
rs17051309	1.00[EUR][1000 genomes]
rs17051311	1.00[EUR][1000 genomes]
rs17051312	1.00[EUR][1000 genomes]
rs17051313	1.00[EUR][1000 genomes]
rs17051314	1.00[EUR][1000 genomes]
rs17051315	1.00[EUR][1000 genomes]
rs17051316	1.00[EUR][1000 genomes]
rs28380115	1.00[EUR][1000 genomes]
rs28465139	1.00[EUR][1000 genomes]
rs28562240	1.00[EUR][1000 genomes]
rs6837539	1.00[EUR][1000 genomes]
rs72668912	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv879859	chr4:121892490-122438312	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv879860	chr4:122030864-122126808	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122058600-122061800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:122058600-122062200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr4:122058600-122062200	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:122058600-122062800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr4:122058600-122063200	Enhancers	Osteobl	bone
6	chr4:122058600-122063800	Enhancers	Primary T cells from cord blood	blood
7	chr4:122058800-122063000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:122059000-122062200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr4:122059000-122062200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:122059200-122061800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:122059200-122062000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr4:122059400-122061800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr4:122059400-122063000	Enhancers	NHDF-Ad	bronchial
14	chr4:122059600-122062200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:122059600-122062600	Enhancers	NH-A	brain
16	chr4:122060200-122062600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:122060400-122063200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:122061000-122061800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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