Variant report

Variant	rs72669602
Chromosome Location	chr14:37681284-37681285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37680569..37683226-chr14:37683414..37685864,2	MCF-7	breast:
2	chr14:37678368..37681315-chr14:38062170..38064330,2	K562	blood:

Variant related genes	Relation type
ENSG00000129514	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10130026	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10134334	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140952	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10483487	0.81[AMR][1000 genomes]
rs10483488	0.85[EUR][1000 genomes]
rs12100470	0.85[EUR][1000 genomes]
rs12101262	0.85[EUR][1000 genomes]
rs12588348	0.88[ASN][1000 genomes]
rs17106324	0.81[AMR][1000 genomes]
rs17106327	0.85[EUR][1000 genomes]
rs17106328	0.81[AMR][1000 genomes]
rs17106343	0.85[EUR][1000 genomes]
rs17106358	0.81[AMR][1000 genomes]
rs17106368	0.85[EUR][1000 genomes]
rs17106374	0.85[EUR][1000 genomes]
rs17106381	0.85[EUR][1000 genomes]
rs17106401	0.81[AMR][1000 genomes]
rs17106410	0.85[EUR][1000 genomes]
rs17106412	0.81[AMR][1000 genomes]
rs17106466	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17106483	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17106486	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1955759	0.81[AMR][1000 genomes]
rs1956513	0.88[AFR][1000 genomes]
rs2180094	0.81[AMR][1000 genomes]
rs2415387	0.85[EUR][1000 genomes]
rs4900688	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4906577	0.81[AMR][1000 genomes]
rs56905022	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56933807	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57235476	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57291540	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57843803	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58262791	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58473518	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59508104	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59740956	0.80[AFR][1000 genomes]
rs60439332	0.81[AMR][1000 genomes]
rs60853724	0.81[AMR][1000 genomes]
rs60921013	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66496057	0.85[EUR][1000 genomes]
rs66862591	0.85[EUR][1000 genomes]
rs7140725	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7143172	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7143753	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7145914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149379	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7151756	0.85[EUR][1000 genomes]
rs72669537	0.81[AMR][1000 genomes]
rs72669543	0.81[AMR][1000 genomes]
rs72669551	0.81[AMR][1000 genomes]
rs72669558	0.81[AMR][1000 genomes]
rs72669579	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72669586	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72669588	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72669600	0.92[EUR][1000 genomes]
rs8007988	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8008529	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015791	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9672074	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9672077	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv915783	chr14:37607836-38002966	Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1036854	chr14:37609535-38013533	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv542045	chr14:37609535-38013533	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv901635	chr14:37623177-37782273	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv3528451	chr14:37631483-37771365	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv3527359	chr14:37631504-37771435	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3370191	chr14:37631508-37771354	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	esv3527360	chr14:37631521-37771311	Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	esv3528462	chr14:37631535-37771345	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	esv3528473	chr14:37631543-37771255	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv3527361	chr14:37631554-37771408	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	esv3528484	chr14:37631599-37771228	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	esv3527363	chr14:37631608-37771230	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv3388675	chr14:37678250-37697892	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	esv3449126	chr14:37678250-37700597	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
18	esv3498551	chr14:37678250-37703471	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
19	esv3498553	chr14:37678250-37703471	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37668200-37682800	Weak transcription	Hela-S3	cervix
2	chr14:37668200-37686000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr14:37671400-37685600	Weak transcription	Psoas Muscle	Psoas
4	chr14:37675200-37681800	Weak transcription	Aorta	Aorta
5	chr14:37675600-37681400	Weak transcription	Gastric	stomach
6	chr14:37675600-37690400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:37675800-37681400	Weak transcription	Brain Angular Gyrus	brain
8	chr14:37675800-37693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:37676000-37681800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:37676000-37681800	Weak transcription	Esophagus	oesophagus
11	chr14:37676000-37683000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:37676000-37688200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:37676000-37695600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:37676600-37688600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:37676600-37699400	Weak transcription	A549	lung
16	chr14:37679400-37682200	Enhancers	HUVEC	blood vessel
17	chr14:37680000-37682000	Strong transcription	HepG2	liver
18	chr14:37680000-37683800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:37680000-37693600	Weak transcription	K562	blood
20	chr14:37680200-37683200	Weak transcription	Adipose Nuclei	Adipose
21	chr14:37680600-37682000	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr14:37680800-37682000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:37680800-37685800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:37681000-37681400	ZNF genes & repeats	Fetal Lung	lung
25	chr14:37681000-37681400	Enhancers	Lung	lung
26	chr14:37681000-37681800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:37681000-37682000	Strong transcription	Fetal Stomach	stomach
28	chr14:37681000-37694200	Weak transcription	Pancreas	Pancrea

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