Variant report

Variant	rs72669551
Chromosome Location	chr14:37589439-37589440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37580174..37584845-chr14:37588606..37592760,5	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10130026	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10134334	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10139302	1.00[ASN][1000 genomes]
rs10140952	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10483487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483488	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100470	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101262	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588348	0.85[AMR][1000 genomes]
rs17106324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106327	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106343	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106368	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106374	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106410	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17106466	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17106483	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17106486	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1955759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415387	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4900688	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4906569	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4906577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4906593	1.00[ASN][1000 genomes]
rs55855906	0.87[ASN][1000 genomes]
rs56905022	0.83[AMR][1000 genomes]
rs56933807	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57011324	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57235476	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57843803	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58262791	0.83[AMR][1000 genomes]
rs58398434	0.90[ASN][1000 genomes]
rs58473518	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59508104	0.83[AMR][1000 genomes]
rs60439332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60853724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60921013	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66496057	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66862591	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67441823	0.90[ASN][1000 genomes]
rs7140725	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7143172	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7143753	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145914	0.81[AMR][1000 genomes]
rs7149379	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7151756	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669535	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72669537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72669543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669566	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72669579	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72669586	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72669588	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72669600	0.84[EUR][1000 genomes]
rs72669602	0.81[AMR][1000 genomes]
rs8007988	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8008529	0.83[AMR][1000 genomes]
rs8015791	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1050174	chr14:37556357-37664143	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1043410	chr14:37556357-37671059	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv564347	chr14:37558794-37590164	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv564348	chr14:37584981-37608459	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37582400-37602800	Weak transcription	K562	blood
2	chr14:37586200-37591000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:37586800-37590800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:37586800-37591600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:37587000-37591000	Weak transcription	HUVEC	blood vessel
6	chr14:37587000-37591000	Weak transcription	NH-A	brain
7	chr14:37587000-37591000	Weak transcription	NHEK	skin
8	chr14:37587000-37591200	Weak transcription	HMEC	breast
9	chr14:37587000-37591400	Weak transcription	HSMMtube	muscle
10	chr14:37587000-37595400	Weak transcription	Aorta	Aorta
11	chr14:37587200-37591000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:37587400-37591000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:37587600-37591200	Weak transcription	Hela-S3	cervix
14	chr14:37588000-37591400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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