Variant report
| Variant | rs72670327 |
|---|---|
| Chromosome Location | chr1:57353835-57353836 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11206932 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12401558 | 0.94[ASN][1000 genomes] |
| rs12406202 | 0.94[ASN][1000 genomes] |
| rs1885002 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1887977 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2145404 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2269114 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2269115 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2269118 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2269119 | 0.94[ASN][1000 genomes] |
| rs2269121 | 0.94[ASN][1000 genomes] |
| rs2300954 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2300955 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35562962 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3768215 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs55894323 | 0.86[ASN][1000 genomes] |
| rs57210737 | 0.96[ASN][1000 genomes] |
| rs58983677 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6681119 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6694643 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6697228 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs706473 | 0.85[EUR][1000 genomes] |
| rs706474 | 0.85[EUR][1000 genomes] |
| rs72670317 | 0.94[ASN][1000 genomes] |
| rs72670319 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869295 | chr1:56894955-57656562 | Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57353600-57355000 | Weak transcription | Liver | Liver |
