Variant report

Variant	rs706473
Chromosome Location	chr1:57339034-57339035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11206933	0.86[JPT][hapmap]
rs1887977	0.86[EUR][1000 genomes]
rs2269118	0.92[EUR][1000 genomes]
rs2300954	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2300955	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35562962	0.86[EUR][1000 genomes]
rs607422	0.81[JPT][hapmap]
rs6683663	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs706474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72670327	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv508215	chr1:57319460-57351150	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57332400-57343000	Strong transcription	Liver	Liver
2	chr1:57334600-57343400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:57337600-57340400	Enhancers	NHDF-Ad	bronchial
4	chr1:57337800-57339200	Enhancers	Fetal Intestine Small	intestine
5	chr1:57337800-57340000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:57338000-57340200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:57338400-57339400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:57338600-57339200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:57338600-57339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:57338800-57339600	Enhancers	Fetal Intestine Large	intestine
11	chr1:57338800-57343400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:57339000-57340000	Strong transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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