Variant report

Variant	rs6683663
Chromosome Location	chr1:57356476-57356477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10489623	0.81[CEU][hapmap]
rs11206932	0.81[CEU][hapmap];0.87[MEX][hapmap]
rs11206933	0.84[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1329449	0.81[CEU][hapmap]
rs1885002	0.87[CEU][hapmap];0.87[MEX][hapmap]
rs2145404	0.84[EUR][1000 genomes]
rs2269114	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2269115	0.87[CEU][hapmap];0.87[MEX][hapmap]
rs2269119	0.81[CEU][hapmap]
rs2300955	0.93[GIH][hapmap];0.87[MEX][hapmap]
rs3768215	0.81[CEU][hapmap];0.87[MEX][hapmap]
rs58983677	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6694643	0.87[CEU][hapmap];0.87[MEX][hapmap]
rs6697228	0.87[CEU][hapmap];0.87[MEX][hapmap]
rs706473	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs706474	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6683663	C1orf177	cis	cerebellum	SCAN
rs6683663	DAB1	cis	parietal	SCAN
rs6683663	YIPF1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57355400-57356800	Enhancers	HepG2	liver
2	chr1:57356200-57359200	Strong transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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