Variant report

Variant	rs11206933
Chromosome Location	chr1:57368222-57368223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10489623	0.81[GIH][hapmap]
rs11206932	0.92[GIH][hapmap]
rs1329449	0.81[GIH][hapmap]
rs1885002	0.84[GIH][hapmap]
rs2269115	0.81[GIH][hapmap]
rs3768215	0.92[GIH][hapmap]
rs6683663	0.84[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6697228	0.81[GIH][hapmap]
rs706473	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57362400-57369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:57364200-57375600	Weak transcription	Pancreas	Pancrea
3	chr1:57364600-57370400	Weak transcription	Gastric	stomach
4	chr1:57364600-57376200	Weak transcription	Stomach Mucosa	stomach
5	chr1:57366600-57368800	Enhancers	Fetal Intestine Small	intestine
6	chr1:57367200-57378400	Enhancers	Liver	Liver
7	chr1:57368000-57368600	Enhancers	Fetal Intestine Large	intestine
8	chr1:57368000-57369400	Weak transcription	HepG2	liver
9	chr1:57368000-57370400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:57368000-57373800	Weak transcription	NHDF-Ad	bronchial
11	chr1:57368200-57370200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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