Variant report

Variant	rs72671322
Chromosome Location	chr14:39460288-39460289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17092037	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108732	0.84[ASN][1000 genomes]
rs56063785	0.92[AFR][1000 genomes]
rs56328886	0.92[AFR][1000 genomes]
rs72669388	0.92[AFR][1000 genomes]
rs72669397	0.89[AFR][1000 genomes]
rs72669400	0.91[AFR][1000 genomes]
rs72671304	0.97[AFR][1000 genomes]
rs72671307	0.92[AFR][1000 genomes]
rs72671311	0.92[AFR][1000 genomes]
rs72671316	0.97[AFR][1000 genomes]
rs72671321	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671323	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv564417	chr14:39452317-39535560	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39450000-39465000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr14:39455600-39464800	Weak transcription	Psoas Muscle	Psoas
3	chr14:39455800-39465200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:39457600-39461600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:39457800-39463800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:39458400-39465000	Enhancers	HUVEC	blood vessel
7	chr14:39458800-39463800	Weak transcription	Brain Substantia Nigra	brain
8	chr14:39459000-39463800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:39459000-39464800	Weak transcription	Right Atrium	heart
10	chr14:39459200-39463800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:39459400-39464000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:39459600-39463600	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:39459600-39463800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr14:39459600-39463800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr14:39459600-39464600	Weak transcription	Left Ventricle	heart
16	chr14:39459600-39469000	Weak transcription	Stomach Mucosa	stomach
17	chr14:39459800-39463800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr14:39460200-39460600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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