Variant report

Variant	rs72669388
Chromosome Location	chr14:39402833-39402834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17092037	0.88[AFR][1000 genomes]
rs17108815	0.81[EUR][1000 genomes]
rs45469795	0.89[EUR][1000 genomes]
rs45540035	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55790340	0.89[EUR][1000 genomes]
rs55987939	0.80[EUR][1000 genomes]
rs55997577	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56063785	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074634	0.89[EUR][1000 genomes]
rs56087094	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56103446	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56125789	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56136756	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225465	0.82[EUR][1000 genomes]
rs56237815	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56328886	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333870	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56334607	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56335002	0.89[EUR][1000 genomes]
rs56341545	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59418195	0.85[EUR][1000 genomes]
rs67808375	0.89[EUR][1000 genomes]
rs7150638	0.81[EUR][1000 genomes]
rs72669383	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669397	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669399	0.98[EUR][1000 genomes]
rs72669400	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72671307	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671309	0.91[EUR][1000 genomes]
rs72671311	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671316	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671321	0.88[AFR][1000 genomes]
rs72671322	0.92[AFR][1000 genomes]
rs72671323	0.92[AFR][1000 genomes]
rs72671332	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671333	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671344	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671349	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671353	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671360	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671362	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671367	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671372	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671379	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671382	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671387	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671398	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671400	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673307	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673314	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673315	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673316	0.89[EUR][1000 genomes]
rs72673317	0.89[EUR][1000 genomes]
rs72673318	0.87[EUR][1000 genomes]
rs72673328	0.85[EUR][1000 genomes]
rs72673329	0.85[EUR][1000 genomes]
rs72673339	0.85[EUR][1000 genomes]
rs8009457	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv901656	chr14:39370726-39423339	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39402400-39403000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links