Variant report

Variant	rs56333870
Chromosome Location	chr14:39527605-39527606
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs17108815	0.87[EUR][1000 genomes]
rs45469295	0.87[EUR][1000 genomes]
rs45469795	0.95[EUR][1000 genomes]
rs45540035	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55790340	0.95[EUR][1000 genomes]
rs55880223	0.87[EUR][1000 genomes]
rs55918207	0.89[EUR][1000 genomes]
rs55981737	0.87[EUR][1000 genomes]
rs55987939	0.86[EUR][1000 genomes]
rs55997577	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56032918	0.87[EUR][1000 genomes]
rs56063785	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074634	0.95[EUR][1000 genomes]
rs56087094	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56103446	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56125789	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56136756	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225465	0.93[EUR][1000 genomes]
rs56225696	0.82[EUR][1000 genomes]
rs56237815	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56276842	0.86[EUR][1000 genomes]
rs56282196	0.87[EUR][1000 genomes]
rs56328886	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56334607	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56335002	0.95[EUR][1000 genomes]
rs56341545	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404404	0.87[EUR][1000 genomes]
rs57248532	0.83[EUR][1000 genomes]
rs59418195	0.91[EUR][1000 genomes]
rs67808375	0.95[EUR][1000 genomes]
rs7147914	0.87[EUR][1000 genomes]
rs7148908	0.84[EUR][1000 genomes]
rs7150638	0.87[EUR][1000 genomes]
rs7161065	0.82[EUR][1000 genomes]
rs72669383	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669388	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669397	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669399	0.91[EUR][1000 genomes]
rs72669400	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671304	0.87[EUR][1000 genomes]
rs72671307	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671309	0.89[EUR][1000 genomes]
rs72671311	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671316	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671332	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671333	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671344	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671349	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671353	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671360	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671362	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671367	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671372	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671379	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671382	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671387	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671398	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671400	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673307	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673314	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673315	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673316	0.95[EUR][1000 genomes]
rs72673317	0.95[EUR][1000 genomes]
rs72673318	0.93[EUR][1000 genomes]
rs72673328	0.91[EUR][1000 genomes]
rs72673329	0.91[EUR][1000 genomes]
rs72673339	0.91[EUR][1000 genomes]
rs72673340	0.88[EUR][1000 genomes]
rs72673346	0.87[EUR][1000 genomes]
rs72673350	0.87[EUR][1000 genomes]
rs72673357	0.89[EUR][1000 genomes]
rs72673359	0.82[EUR][1000 genomes]
rs8009457	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv564417	chr14:39452317-39535560	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39519600-39529400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:39520200-39528000	Strong transcription	Muscle Satellite Cultured Cells	--
3	chr14:39521200-39529800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:39521200-39535600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:39523200-39529600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:39523600-39528000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
7	chr14:39523800-39540200	Weak transcription	Psoas Muscle	Psoas
8	chr14:39524000-39528600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:39524000-39529200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr14:39524200-39529000	ZNF genes & repeats	GM12878-XiMat	blood
11	chr14:39524200-39529400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr14:39524200-39529600	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr14:39524400-39528200	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr14:39524400-39529200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr14:39525400-39529400	Weak transcription	Fetal Heart	heart
16	chr14:39525400-39540600	Strong transcription	NH-A	brain
17	chr14:39525600-39528600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:39525600-39529200	Weak transcription	Hela-S3	cervix
19	chr14:39525600-39529400	Weak transcription	Brain Substantia Nigra	brain
20	chr14:39525600-39530800	Weak transcription	NHLF	lung
21	chr14:39525600-39533400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:39525600-39533400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:39525600-39540600	Strong transcription	HSMM	muscle
24	chr14:39525600-39541000	Weak transcription	Brain Angular Gyrus	brain
25	chr14:39525600-39565600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr14:39526000-39529000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:39526000-39529000	Weak transcription	HMEC	breast
28	chr14:39526000-39529200	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:39526000-39529400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr14:39526000-39537400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:39526000-39557200	Strong transcription	Osteobl	bone
32	chr14:39526200-39529000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr14:39526200-39535200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:39526400-39528600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:39526400-39529200	Weak transcription	Fetal Brain Male	brain
36	chr14:39526400-39563200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:39526600-39534200	Strong transcription	Brain Germinal Matrix	brain
38	chr14:39526800-39528000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:39526800-39528600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr14:39526800-39528800	Weak transcription	HUVEC	blood vessel
41	chr14:39526800-39529200	Weak transcription	Fetal Thymus	thymus
42	chr14:39526800-39529200	Weak transcription	Ovary	ovary
43	chr14:39526800-39529400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:39526800-39529600	Weak transcription	Fetal Kidney	kidney
45	chr14:39526800-39530400	Weak transcription	Left Ventricle	heart
46	chr14:39526800-39530400	Weak transcription	Pancreas	Pancrea
47	chr14:39526800-39531000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr14:39526800-39531200	Weak transcription	Colon Smooth Muscle	Colon
49	chr14:39526800-39533400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr14:39526800-39534000	Weak transcription	Small Intestine	intestine

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