Variant report

Variant	rs56032918
Chromosome Location	chr14:39656578-39656579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:39654749..39656779-chr14:39701075..39703630,2	K562	blood:
2	chr14:39651767..39657982-chr14:39696424..39701629,5	MCF-7	breast:
3	chr14:39655012..39658223-chr14:39734448..39737542,3	MCF-7	breast:
4	chr14:39655760..39659371-chr14:39734225..39738994,7	K562	blood:
5	chr14:39655751..39657346-chr14:39681052..39683372,2	K562	blood:
6	chr14:39656147..39659470-chr14:39734225..39738099,6	K562	blood:
7	chr14:39655214..39656857-chr14:39716747..39718592,2	K562	blood:
8	chr14:39571020..39573430-chr14:39654386..39657374,3	K562	blood:
9	chr14:39655421..39657718-chr14:39690495..39693068,2	K562	blood:
10	chr14:39654966..39657537-chr14:39669625..39671853,2	K562	blood:
11	chr14:39654966..39657894-chr14:39668988..39671853,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258651	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000150526	Chromatin interaction
ENSG00000100934	Chromatin interaction
ENSG00000150527	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10483540	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108815	0.83[EUR][1000 genomes]
rs45469295	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45469795	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs45540035	0.89[EUR][1000 genomes]
rs55706043	1.00[ASN][1000 genomes]
rs55790340	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55880223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918207	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55981737	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987939	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55997577	0.89[EUR][1000 genomes]
rs56063785	0.80[EUR][1000 genomes]
rs56074634	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56087094	0.80[EUR][1000 genomes]
rs56103446	0.89[EUR][1000 genomes]
rs56125789	0.89[EUR][1000 genomes]
rs56136756	0.80[EUR][1000 genomes]
rs56182546	1.00[ASN][1000 genomes]
rs56225465	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225696	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs56237815	0.80[EUR][1000 genomes]
rs56276842	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56282196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333870	0.87[EUR][1000 genomes]
rs56334607	0.80[EUR][1000 genomes]
rs56335002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56341545	0.80[EUR][1000 genomes]
rs56404404	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57248532	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59418195	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6571907	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67808375	0.91[EUR][1000 genomes]
rs67970726	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147914	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148908	0.80[EUR][1000 genomes]
rs7150638	0.83[EUR][1000 genomes]
rs7161065	0.87[EUR][1000 genomes]
rs72671333	0.80[EUR][1000 genomes]
rs72671344	0.80[EUR][1000 genomes]
rs72671349	0.80[EUR][1000 genomes]
rs72671353	0.80[EUR][1000 genomes]
rs72671360	0.85[EUR][1000 genomes]
rs72671362	0.85[EUR][1000 genomes]
rs72671367	0.85[EUR][1000 genomes]
rs72671372	0.89[EUR][1000 genomes]
rs72671379	0.89[EUR][1000 genomes]
rs72671382	0.89[EUR][1000 genomes]
rs72671387	0.89[EUR][1000 genomes]
rs72671398	0.89[EUR][1000 genomes]
rs72671400	0.89[EUR][1000 genomes]
rs72673314	0.89[EUR][1000 genomes]
rs72673315	0.91[EUR][1000 genomes]
rs72673316	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72673317	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72673318	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72673328	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673329	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673339	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673340	0.93[EUR][1000 genomes]
rs72673346	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673350	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673357	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673358	0.87[AFR][1000 genomes]
rs72673359	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673379	1.00[ASN][1000 genomes]
rs72673381	1.00[ASN][1000 genomes]
rs72673384	1.00[ASN][1000 genomes]
rs72673387	1.00[ASN][1000 genomes]
rs72673388	1.00[ASN][1000 genomes]
rs8009457	0.80[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39645800-39657200	Strong transcription	HSMM	muscle
2	chr14:39647800-39658800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:39651000-39656600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:39651000-39657000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:39651000-39661600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr14:39651000-39662000	Weak transcription	Pancreas	Pancrea
7	chr14:39651200-39657000	Weak transcription	Small Intestine	intestine
8	chr14:39652400-39657200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:39653000-39658000	Weak transcription	Fetal Lung	lung
10	chr14:39653000-39662000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:39653200-39656800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:39653200-39661600	Weak transcription	Right Ventricle	heart
13	chr14:39653400-39657000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:39653400-39662000	Weak transcription	NHDF-Ad	bronchial
15	chr14:39653600-39658800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr14:39654000-39657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:39654200-39657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:39654400-39656800	Weak transcription	Spleen	Spleen
19	chr14:39654400-39657000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:39654400-39657400	Weak transcription	Primary B cells from cord blood	blood
21	chr14:39654400-39657800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:39654400-39658400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:39654400-39658800	Weak transcription	Thymus	Thymus
24	chr14:39654400-39661600	Weak transcription	Left Ventricle	heart
25	chr14:39654400-39661800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr14:39654400-39661800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr14:39654400-39672000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:39654600-39656800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr14:39654600-39657000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:39654600-39657400	Weak transcription	Osteobl	bone
31	chr14:39654600-39657800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:39654600-39661600	Weak transcription	Psoas Muscle	Psoas
33	chr14:39654800-39656600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:39654800-39656600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr14:39654800-39656800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:39654800-39656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:39654800-39657000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:39654800-39658000	Weak transcription	Fetal Brain Female	brain
39	chr14:39654800-39658200	Weak transcription	Adipose Nuclei	Adipose
40	chr14:39654800-39659400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr14:39654800-39662000	Weak transcription	Liver	Liver
42	chr14:39655000-39656600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr14:39655000-39656600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr14:39655000-39656600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr14:39655000-39656600	Weak transcription	HUVEC	blood vessel
46	chr14:39655000-39657000	Weak transcription	HMEC	breast
47	chr14:39655000-39657200	Weak transcription	NH-A	brain
48	chr14:39655000-39657600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:39655000-39658400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:39655000-39658800	Weak transcription	Stomach Smooth Muscle	stomach

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