Variant report

Variant	rs59418195
Chromosome Location	chr14:39593356-39593357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39591967..39594442-chr14:39615758..39618049,2	MCF-7	breast:
2	chr14:39591499..39594370-chr14:39626411..39628050,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10483540	0.87[EUR][1000 genomes]
rs17108815	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs45469295	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45469795	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs45540035	0.93[EUR][1000 genomes]
rs55790340	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55880223	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55918207	0.93[EUR][1000 genomes]
rs55981737	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55987939	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55997577	0.93[EUR][1000 genomes]
rs56032918	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56063785	0.85[EUR][1000 genomes]
rs56074634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56087094	0.85[EUR][1000 genomes]
rs56103446	0.93[EUR][1000 genomes]
rs56125789	0.93[EUR][1000 genomes]
rs56136756	0.85[EUR][1000 genomes]
rs56225465	0.98[EUR][1000 genomes]
rs56225696	0.91[EUR][1000 genomes]
rs56237815	0.85[EUR][1000 genomes]
rs56276842	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56282196	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56328886	0.85[EUR][1000 genomes]
rs56333870	0.91[EUR][1000 genomes]
rs56334607	0.85[EUR][1000 genomes]
rs56335002	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56341545	0.85[EUR][1000 genomes]
rs56404404	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57248532	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6571907	0.87[EUR][1000 genomes]
rs67808375	0.96[EUR][1000 genomes]
rs67970726	0.87[EUR][1000 genomes]
rs7147914	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7148908	0.84[EUR][1000 genomes]
rs7150638	0.88[EUR][1000 genomes]
rs7161065	0.87[EUR][1000 genomes]
rs72669388	0.85[EUR][1000 genomes]
rs72669397	0.85[EUR][1000 genomes]
rs72669399	0.82[EUR][1000 genomes]
rs72669400	0.83[EUR][1000 genomes]
rs72671304	0.83[EUR][1000 genomes]
rs72671307	0.83[EUR][1000 genomes]
rs72671309	0.80[EUR][1000 genomes]
rs72671311	0.83[EUR][1000 genomes]
rs72671316	0.85[EUR][1000 genomes]
rs72671332	0.82[EUR][1000 genomes]
rs72671333	0.85[EUR][1000 genomes]
rs72671344	0.85[EUR][1000 genomes]
rs72671349	0.85[EUR][1000 genomes]
rs72671353	0.85[EUR][1000 genomes]
rs72671360	0.89[EUR][1000 genomes]
rs72671362	0.89[EUR][1000 genomes]
rs72671367	0.89[EUR][1000 genomes]
rs72671372	0.93[EUR][1000 genomes]
rs72671379	0.93[EUR][1000 genomes]
rs72671382	0.93[EUR][1000 genomes]
rs72671387	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72671398	0.93[EUR][1000 genomes]
rs72671400	0.93[EUR][1000 genomes]
rs72673307	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72673314	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72673315	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs72673316	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673317	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673318	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72673328	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673329	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673339	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72673340	0.93[EUR][1000 genomes]
rs72673346	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673350	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72673357	0.93[EUR][1000 genomes]
rs72673359	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8009457	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39583800-39626000	Weak transcription	Spleen	Spleen
2	chr14:39584000-39595000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:39584000-39615000	Weak transcription	Pancreas	Pancrea
4	chr14:39584000-39623600	Weak transcription	Esophagus	oesophagus
5	chr14:39584200-39610800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
7	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:39584400-39593400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:39584400-39617200	Weak transcription	Psoas Muscle	Psoas
10	chr14:39584400-39620800	Weak transcription	Colonic Mucosa	Colon
11	chr14:39584400-39626600	Weak transcription	Aorta	Aorta
12	chr14:39584600-39597600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:39584600-39597800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:39584600-39597800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:39584600-39603600	Weak transcription	K562	blood
16	chr14:39584600-39604600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr14:39584600-39609600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:39584600-39625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:39585200-39608200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr14:39585800-39594600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:39585800-39595000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:39585800-39608200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr14:39586000-39594800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:39586000-39595000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:39586000-39595000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:39586000-39595600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:39586000-39608000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:39586000-39608400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:39586000-39608600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:39586000-39608800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr14:39586200-39598600	Strong transcription	Dnd41	blood
32	chr14:39586600-39599800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr14:39586600-39610600	Strong transcription	HepG2	liver
34	chr14:39586800-39594800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:39586800-39594800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:39586800-39595200	Strong transcription	Fetal Thymus	thymus
37	chr14:39586800-39599400	Strong transcription	Primary B cells from peripheral blood	blood
38	chr14:39587000-39594000	Strong transcription	Primary hematopoietic stem cells	blood
39	chr14:39587000-39595800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr14:39587000-39596400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:39587200-39593400	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr14:39587200-39593600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr14:39587200-39594800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr14:39587200-39595000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr14:39587200-39609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:39587400-39594200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr14:39587400-39594600	Strong transcription	Liver	Liver
48	chr14:39587400-39595400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr14:39587400-39598600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr14:39587400-39608400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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