Variant report

Variant	rs6571907
Chromosome Location	chr14:39682485-39682486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39643409..39646477-chr14:39682252..39685201,4	MCF-7	breast:
2	chr14:39655751..39657346-chr14:39681052..39683372,2	K562	blood:
3	chr14:39680164..39682554-chr14:39734526..39737073,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259083	Chromatin interaction
ENSG00000100941	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000150527	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10483540	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108815	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs45469295	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45469795	0.82[EUR][1000 genomes]
rs45540035	0.80[EUR][1000 genomes]
rs55706043	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55790340	0.82[EUR][1000 genomes]
rs55880223	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55918207	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55981737	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987939	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55997577	0.80[EUR][1000 genomes]
rs56032918	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074634	0.82[EUR][1000 genomes]
rs56103446	0.80[EUR][1000 genomes]
rs56125789	0.80[EUR][1000 genomes]
rs56182546	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225465	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225696	0.91[EUR][1000 genomes]
rs56276842	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56282196	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56335002	0.82[EUR][1000 genomes]
rs56404404	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57248532	1.00[ASN][1000 genomes]
rs59418195	0.87[EUR][1000 genomes]
rs6571906	1.00[CEU][hapmap]
rs67808375	0.82[EUR][1000 genomes]
rs67970726	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147914	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150638	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs72671372	0.80[EUR][1000 genomes]
rs72671379	0.80[EUR][1000 genomes]
rs72671382	0.80[EUR][1000 genomes]
rs72671387	0.80[EUR][1000 genomes]
rs72671398	0.80[EUR][1000 genomes]
rs72671400	0.80[EUR][1000 genomes]
rs72673314	0.81[EUR][1000 genomes]
rs72673315	0.82[EUR][1000 genomes]
rs72673316	0.82[EUR][1000 genomes]
rs72673317	0.82[EUR][1000 genomes]
rs72673318	0.80[EUR][1000 genomes]
rs72673328	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673329	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673339	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673340	0.84[EUR][1000 genomes]
rs72673346	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673350	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673357	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673359	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673379	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673381	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673384	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673387	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72673388	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39681600-39686600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:39681800-39684600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:39681800-39686400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:39681800-39686400	Weak transcription	HUVEC	blood vessel
6	chr14:39682000-39685200	Weak transcription	Hela-S3	cervix
7	chr14:39682000-39686400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:39682000-39686400	Weak transcription	A549	lung
9	chr14:39682000-39686400	Weak transcription	HMEC	breast
10	chr14:39682000-39686400	Weak transcription	NHEK	skin

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