Variant report

Variant	rs56225696
Chromosome Location	chr14:39663400-39663401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39660811..39663578-chr14:39679373..39681871,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258671	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10483540	0.91[EUR][1000 genomes]
rs45469295	0.96[EUR][1000 genomes]
rs45469795	0.87[EUR][1000 genomes]
rs45540035	0.85[EUR][1000 genomes]
rs55790340	0.87[EUR][1000 genomes]
rs55880223	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs55918207	0.93[EUR][1000 genomes]
rs55981737	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs55987939	0.91[EUR][1000 genomes]
rs55997577	0.85[EUR][1000 genomes]
rs56032918	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs56074634	0.87[EUR][1000 genomes]
rs56103446	0.85[EUR][1000 genomes]
rs56125789	0.85[EUR][1000 genomes]
rs56225465	0.89[EUR][1000 genomes]
rs56276842	0.91[EUR][1000 genomes]
rs56282196	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs56333870	0.82[EUR][1000 genomes]
rs56335002	0.87[EUR][1000 genomes]
rs56404404	0.96[EUR][1000 genomes]
rs57248532	0.83[EUR][1000 genomes]
rs59418195	0.91[EUR][1000 genomes]
rs6571907	0.91[EUR][1000 genomes]
rs67808375	0.87[EUR][1000 genomes]
rs67970726	0.96[EUR][1000 genomes]
rs7147914	0.96[EUR][1000 genomes]
rs7161065	0.82[EUR][1000 genomes]
rs72671360	0.80[EUR][1000 genomes]
rs72671362	0.80[EUR][1000 genomes]
rs72671367	0.80[EUR][1000 genomes]
rs72671372	0.85[EUR][1000 genomes]
rs72671379	0.85[EUR][1000 genomes]
rs72671382	0.85[EUR][1000 genomes]
rs72671387	0.85[EUR][1000 genomes]
rs72671398	0.85[EUR][1000 genomes]
rs72671400	0.85[EUR][1000 genomes]
rs72673314	0.85[EUR][1000 genomes]
rs72673315	0.87[EUR][1000 genomes]
rs72673316	0.87[EUR][1000 genomes]
rs72673317	0.87[EUR][1000 genomes]
rs72673318	0.85[EUR][1000 genomes]
rs72673328	0.91[EUR][1000 genomes]
rs72673329	0.91[EUR][1000 genomes]
rs72673339	0.91[EUR][1000 genomes]
rs72673340	0.89[EUR][1000 genomes]
rs72673346	0.96[EUR][1000 genomes]
rs72673350	0.96[EUR][1000 genomes]
rs72673357	0.93[EUR][1000 genomes]
rs72673359	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39654400-39672000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:39658000-39672400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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