Variant report

Variant	rs72669399
Chromosome Location	chr14:39412304-39412305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39409994..39412907-chr14:39426330..39428595,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs45469795	0.87[EUR][1000 genomes]
rs45540035	0.89[EUR][1000 genomes]
rs55790340	0.87[EUR][1000 genomes]
rs55997577	0.89[EUR][1000 genomes]
rs56063785	0.80[EUR][1000 genomes]
rs56074634	0.87[EUR][1000 genomes]
rs56087094	0.80[EUR][1000 genomes]
rs56103446	0.89[EUR][1000 genomes]
rs56125789	0.89[EUR][1000 genomes]
rs56136756	0.80[EUR][1000 genomes]
rs56225465	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56237815	0.80[EUR][1000 genomes]
rs56328886	0.80[EUR][1000 genomes]
rs56333870	0.91[EUR][1000 genomes]
rs56334607	0.80[EUR][1000 genomes]
rs56335002	0.87[EUR][1000 genomes]
rs56341545	0.80[EUR][1000 genomes]
rs59418195	0.82[EUR][1000 genomes]
rs67808375	0.87[EUR][1000 genomes]
rs72669383	0.89[EUR][1000 genomes]
rs72669388	0.98[EUR][1000 genomes]
rs72669397	0.98[EUR][1000 genomes]
rs72669400	0.91[EUR][1000 genomes]
rs72671304	0.91[EUR][1000 genomes]
rs72671307	0.91[EUR][1000 genomes]
rs72671309	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72671311	0.91[EUR][1000 genomes]
rs72671316	0.80[EUR][1000 genomes]
rs72671332	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72671333	0.80[EUR][1000 genomes]
rs72671344	0.80[EUR][1000 genomes]
rs72671349	0.80[EUR][1000 genomes]
rs72671353	0.80[EUR][1000 genomes]
rs72671360	0.84[EUR][1000 genomes]
rs72671362	0.84[EUR][1000 genomes]
rs72671367	0.84[EUR][1000 genomes]
rs72671372	0.89[EUR][1000 genomes]
rs72671379	0.89[EUR][1000 genomes]
rs72671382	0.89[EUR][1000 genomes]
rs72671387	0.89[EUR][1000 genomes]
rs72671398	0.89[EUR][1000 genomes]
rs72671400	0.89[EUR][1000 genomes]
rs72673314	0.85[EUR][1000 genomes]
rs72673315	0.87[EUR][1000 genomes]
rs72673316	0.87[EUR][1000 genomes]
rs72673317	0.87[EUR][1000 genomes]
rs72673318	0.84[EUR][1000 genomes]
rs72673328	0.82[EUR][1000 genomes]
rs72673329	0.82[EUR][1000 genomes]
rs72673339	0.82[EUR][1000 genomes]
rs72673340	1.00[AFR][1000 genomes]
rs8009457	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv901656	chr14:39370726-39423339	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv901657	chr14:39410706-39460072	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39406000-39412600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:39410200-39412400	Weak transcription	Brain Substantia Nigra	brain
3	chr14:39412000-39412600	Enhancers	Brain Anterior Caudate	brain
4	chr14:39412000-39413800	Enhancers	Brain Hippocampus Middle	brain
5	chr14:39412200-39412600	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:39412200-39412800	Enhancers	Pancreas	Pancrea
7	chr14:39412200-39413000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:39412200-39414400	Enhancers	Brain Inferior Temporal Lobe	brain

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