Variant report

Variant	rs7148908
Chromosome Location	chr14:39576090-39576091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39571044..39574449-chr14:39575206..39581914,9	K562	blood:
2	chr14:39569997..39574883-chr14:39575393..39578347,7	MCF-7	breast:
3	chr14:39570753..39574803-chr14:39575206..39579488,6	K562	blood:

Variant related genes	Relation type
ENSG00000100934	Chromatin interaction
ENSG00000258651	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17108815	0.96[EUR][1000 genomes]
rs45469295	0.80[EUR][1000 genomes]
rs45469795	0.88[EUR][1000 genomes]
rs45540035	0.86[EUR][1000 genomes]
rs55790340	0.88[EUR][1000 genomes]
rs55880223	0.80[EUR][1000 genomes]
rs55981737	0.80[EUR][1000 genomes]
rs55997577	0.86[EUR][1000 genomes]
rs56032918	0.80[EUR][1000 genomes]
rs56074634	0.88[EUR][1000 genomes]
rs56103446	0.86[EUR][1000 genomes]
rs56125789	0.86[EUR][1000 genomes]
rs56225465	0.82[EUR][1000 genomes]
rs56282196	0.80[EUR][1000 genomes]
rs56333870	0.84[EUR][1000 genomes]
rs56335002	0.88[EUR][1000 genomes]
rs56404404	0.80[EUR][1000 genomes]
rs57248532	0.92[EUR][1000 genomes]
rs59418195	0.84[EUR][1000 genomes]
rs67808375	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7147914	0.80[EUR][1000 genomes]
rs7150638	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72671360	0.82[EUR][1000 genomes]
rs72671362	0.82[EUR][1000 genomes]
rs72671367	0.82[EUR][1000 genomes]
rs72671372	0.86[EUR][1000 genomes]
rs72671379	0.86[EUR][1000 genomes]
rs72671382	0.86[EUR][1000 genomes]
rs72671387	0.86[EUR][1000 genomes]
rs72671398	0.86[EUR][1000 genomes]
rs72671400	0.86[EUR][1000 genomes]
rs72673307	0.88[EUR][1000 genomes]
rs72673314	0.86[EUR][1000 genomes]
rs72673315	0.88[EUR][1000 genomes]
rs72673316	0.88[EUR][1000 genomes]
rs72673317	0.88[EUR][1000 genomes]
rs72673318	0.86[EUR][1000 genomes]
rs72673328	0.84[EUR][1000 genomes]
rs72673329	0.84[EUR][1000 genomes]
rs72673339	0.84[EUR][1000 genomes]
rs72673346	0.80[EUR][1000 genomes]
rs72673350	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39573200-39577800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:39573400-39578800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr14:39573400-39579000	Weak transcription	K562	blood
4	chr14:39573400-39582400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr14:39573400-39583000	Weak transcription	HSMM	muscle
6	chr14:39573800-39583000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:39573800-39583000	Weak transcription	Thymus	Thymus
8	chr14:39574000-39576600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:39574000-39582400	Weak transcription	A549	lung
10	chr14:39574000-39582800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:39574000-39583000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:39574000-39583000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr14:39574000-39583000	Weak transcription	Stomach Mucosa	stomach
14	chr14:39574200-39576200	Weak transcription	Fetal Intestine Small	intestine
15	chr14:39574200-39576400	Weak transcription	Fetal Intestine Large	intestine
16	chr14:39574200-39576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:39574200-39582400	Weak transcription	Dnd41	blood
18	chr14:39574200-39583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:39574400-39576400	Weak transcription	HepG2	liver
20	chr14:39574400-39576800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:39574400-39576800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:39574400-39578400	Weak transcription	GM12878-XiMat	blood
23	chr14:39574400-39582400	Weak transcription	Hela-S3	cervix
24	chr14:39574400-39582800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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