Variant report

Variant	rs72671640
Chromosome Location	chr1:67254176-67254177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10437080	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566246	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133172	1.00[ASN][1000 genomes]
rs2133173	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549194	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55701662	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55950016	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782765	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61782766	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588218	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524091	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7524784	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7530784	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7541120	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9988543	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9988544	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67253400-67254400	Enhancers	Primary B cells from cord blood	blood
2	chr1:67253400-67254600	Enhancers	Primary B cells from peripheral blood	blood
3	chr1:67253400-67254600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr1:67253600-67254200	Enhancers	Primary hematopoietic stem cells	blood
5	chr1:67253600-67254400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:67253600-67254600	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr1:67253600-67254600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:67253600-67254600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:67253600-67254800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr1:67253600-67255000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:67253600-67255000	Enhancers	Dnd41	blood
12	chr1:67253800-67254400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:67253800-67254400	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:67253800-67254600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:67253800-67254600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:67253800-67254600	Enhancers	GM12878-XiMat	blood
17	chr1:67253800-67255000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr1:67254000-67254200	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr1:67254000-67254600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr1:67254000-67254600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr1:67254000-67254800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links