Variant report

Variant	rs9988544
Chromosome Location	chr2:229942500-229942501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10437080	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1566246	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2133172	0.93[ASN][1000 genomes]
rs2133173	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28549194	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55701662	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55950016	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61782765	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61782766	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6588218	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72671640	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7524091	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7524784	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7530784	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7541120	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9988543	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:229929000-229948400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:229931600-229945000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:229932000-229952800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:229932400-229944600	Weak transcription	Aorta	Aorta
5	chr2:229933400-229952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:229936200-229946200	Weak transcription	HSMMtube	muscle
7	chr2:229936600-229947000	Weak transcription	HSMM	muscle
8	chr2:229940600-229952000	Weak transcription	Ovary	ovary
9	chr2:229940800-229947000	Weak transcription	Adipose Nuclei	Adipose
10	chr2:229940800-229953200	Weak transcription	Fetal Lung	lung
11	chr2:229941000-229942800	Weak transcription	Liver	Liver
12	chr2:229941000-229951400	Weak transcription	Left Ventricle	heart
13	chr2:229941200-229942600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:229942200-229948000	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links