Variant report

Variant	rs72671978
Chromosome Location	chr1:45135873-45135874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:45091833..45094716-chr1:45133545..45136119,2	K562	blood:
2	chr1:45135137..45136656-chr1:45184445..45187267,2	MCF-7	breast:
3	chr1:45095169..45100377-chr1:45133934..45142864,15	K562	blood:
4	chr1:45135067..45137597-chr1:45138521..45141291,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198520	Chromatin interaction
ENSG00000187147	Chromatin interaction
ENSG00000126106	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56257701	0.95[EUR][1000 genomes]
rs6667593	0.95[EUR][1000 genomes]
rs72671963	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72671972	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533037	chr1:44361728-45333408	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv1004861	chr1:44843654-45210176	Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
3	nsv534940	chr1:44843654-45210176	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	346 gene(s)	inside rSNPs	diseases
4	nsv998476	chr1:45001278-45311757	Flanking Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	426 gene(s)	inside rSNPs	diseases
5	nsv534941	chr1:45001278-45311757	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	426 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45104000-45138200	Weak transcription	Fetal Brain Male	brain
2	chr1:45115200-45137800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:45115800-45138000	Weak transcription	NHDF-Ad	bronchial
4	chr1:45117200-45137800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:45117200-45138600	Weak transcription	Aorta	Aorta
6	chr1:45117400-45138000	Weak transcription	Left Ventricle	heart
7	chr1:45118600-45138600	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:45119200-45139200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr1:45119800-45138000	Weak transcription	Primary T cells from cord blood	blood
10	chr1:45121000-45137600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:45121000-45138600	Weak transcription	Gastric	stomach
12	chr1:45125400-45137800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:45125400-45138000	Weak transcription	Fetal Brain Female	brain
14	chr1:45126200-45136800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:45126200-45137600	Weak transcription	Adipose Nuclei	Adipose
16	chr1:45126200-45137800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:45126400-45137600	Weak transcription	Fetal Stomach	stomach
18	chr1:45126400-45137800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:45126400-45138200	Weak transcription	Fetal Lung	lung
20	chr1:45127800-45138400	Weak transcription	Small Intestine	intestine
21	chr1:45128000-45136400	Weak transcription	Brain Hippocampus Middle	brain
22	chr1:45128200-45136000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:45128200-45137000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:45128200-45137600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:45128400-45136800	Weak transcription	Placenta	Placenta
26	chr1:45128400-45137600	Weak transcription	Right Atrium	heart
27	chr1:45128400-45137800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:45128600-45136800	Weak transcription	Brain Anterior Caudate	brain
29	chr1:45128600-45137000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:45128600-45137800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr1:45128600-45138000	Weak transcription	Ovary	ovary
32	chr1:45128800-45137600	Weak transcription	Liver	Liver
33	chr1:45128800-45137600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr1:45128800-45138000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr1:45129000-45136000	Weak transcription	Fetal Muscle Leg	muscle
36	chr1:45129400-45138200	Weak transcription	Fetal Intestine Large	intestine
37	chr1:45129600-45138000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr1:45129600-45138000	Weak transcription	HepG2	liver
39	chr1:45130600-45137600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr1:45130800-45136600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:45130800-45137000	Weak transcription	Lung	lung
42	chr1:45130800-45138000	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr1:45130800-45139000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr1:45130800-45139000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr1:45131000-45136000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:45131000-45136000	Weak transcription	GM12878-XiMat	blood
47	chr1:45131000-45136200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr1:45131000-45136400	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr1:45131000-45136400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:45131000-45136800	Weak transcription	Monocytes-CD14+_RO01746	blood

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