Variant report

Variant	rs72672557
Chromosome Location	chr4:121390147-121390148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1526330	1.00[AFR][1000 genomes]
rs6814496	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6821789	1.00[AFR][1000 genomes]
rs6846092	1.00[AFR][1000 genomes]
rs72670416	1.00[AFR][1000 genomes]
rs72670420	1.00[AFR][1000 genomes]
rs72670421	1.00[AFR][1000 genomes]
rs72670425	1.00[AFR][1000 genomes]
rs72670427	1.00[AFR][1000 genomes]
rs72670428	1.00[AFR][1000 genomes]
rs72670431	1.00[AFR][1000 genomes]
rs72670444	1.00[AFR][1000 genomes]
rs72670447	1.00[AFR][1000 genomes]
rs72670460	1.00[AFR][1000 genomes]
rs72670461	1.00[AFR][1000 genomes]
rs72670464	1.00[AFR][1000 genomes]
rs72670466	1.00[AFR][1000 genomes]
rs72670477	1.00[AFR][1000 genomes]
rs72670486	1.00[AFR][1000 genomes]
rs72672520	1.00[AFR][1000 genomes]
rs72672523	1.00[AFR][1000 genomes]
rs72672525	1.00[AFR][1000 genomes]
rs72672526	1.00[AFR][1000 genomes]
rs72672528	1.00[AFR][1000 genomes]
rs72672530	1.00[AFR][1000 genomes]
rs72672531	1.00[AFR][1000 genomes]
rs72672543	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72672545	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72672546	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72672547	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72672549	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs72672551	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72672553	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72672555	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7662162	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv879853	chr4:121292665-121513215	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121388000-121391000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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