Variant report

Variant	rs72672549
Chromosome Location	chr4:121364702-121364703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121361067..121362763-chr4:121362852..121365271,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1526330	1.00[AFR][1000 genomes]
rs6814496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821789	1.00[AFR][1000 genomes]
rs6846092	1.00[AFR][1000 genomes]
rs72668898	1.00[AFR][1000 genomes]
rs72668899	1.00[AFR][1000 genomes]
rs72668902	1.00[AFR][1000 genomes]
rs72670409	1.00[AFR][1000 genomes]
rs72670410	1.00[AFR][1000 genomes]
rs72670412	1.00[AFR][1000 genomes]
rs72670414	1.00[AFR][1000 genomes]
rs72670415	1.00[AFR][1000 genomes]
rs72670416	1.00[AFR][1000 genomes]
rs72670420	1.00[AFR][1000 genomes]
rs72670421	1.00[AFR][1000 genomes]
rs72670425	1.00[AFR][1000 genomes]
rs72670427	1.00[AFR][1000 genomes]
rs72670428	1.00[AFR][1000 genomes]
rs72670431	1.00[AFR][1000 genomes]
rs72670444	1.00[AFR][1000 genomes]
rs72670447	1.00[AFR][1000 genomes]
rs72670460	1.00[AFR][1000 genomes]
rs72670461	1.00[AFR][1000 genomes]
rs72670464	1.00[AFR][1000 genomes]
rs72670466	1.00[AFR][1000 genomes]
rs72670477	1.00[AFR][1000 genomes]
rs72670486	1.00[AFR][1000 genomes]
rs72672520	1.00[AFR][1000 genomes]
rs72672523	1.00[AFR][1000 genomes]
rs72672525	1.00[AFR][1000 genomes]
rs72672526	1.00[AFR][1000 genomes]
rs72672528	1.00[AFR][1000 genomes]
rs72672530	1.00[AFR][1000 genomes]
rs72672531	1.00[AFR][1000 genomes]
rs72672543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72672545	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672547	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672551	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672553	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72672555	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72672557	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7662162	1.00[AFR][1000 genomes]
rs7667780	1.00[ASN][1000 genomes]
rs7686793	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv879853	chr4:121292665-121513215	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121361800-121364800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:121362400-121377400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:121363000-121365800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:121363200-121365600	Enhancers	NHDF-Ad	bronchial
5	chr4:121363600-121368600	Weak transcription	Fetal Heart	heart
6	chr4:121364000-121365600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:121364000-121365600	Enhancers	Osteobl	bone
8	chr4:121364200-121364800	Enhancers	Fetal Lung	lung
9	chr4:121364200-121365000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:121364400-121369600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:121364600-121364800	Enhancers	Aorta	Aorta

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