Variant report

Variant	rs7686793
Chromosome Location	chr4:121376971-121376972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11938648	0.87[AFR][1000 genomes]
rs55637801	0.95[AFR][1000 genomes]
rs6814496	1.00[ASN][1000 genomes]
rs72672543	1.00[ASN][1000 genomes]
rs72672545	1.00[ASN][1000 genomes]
rs72672546	1.00[ASN][1000 genomes]
rs72672547	1.00[ASN][1000 genomes]
rs72672549	1.00[ASN][1000 genomes]
rs72672550	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72672551	1.00[ASN][1000 genomes]
rs72672553	1.00[ASN][1000 genomes]
rs72672556	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73843217	0.87[AFR][1000 genomes]
rs73843218	0.89[AFR][1000 genomes]
rs73843219	0.88[AFR][1000 genomes]
rs73843221	0.88[AFR][1000 genomes]
rs73843223	0.95[AFR][1000 genomes]
rs73843229	0.97[AFR][1000 genomes]
rs73843230	0.99[AFR][1000 genomes]
rs73843231	0.98[AFR][1000 genomes]
rs7667780	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7691107	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv595333	chr4:121093248-121440368	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005240	chr4:121093285-121420997	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv879853	chr4:121292665-121513215	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121362400-121377400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:121374200-121379400	Weak transcription	Fetal Lung	lung
3	chr4:121375600-121387600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links